46

Alleles C/G [2] Ancestral:G [2] Ambiguity code: S [2] MAF: 0.39 [2]
Location: 4:38831586 [2]
SNP ID: rs5743788 [1]
GWAS Trait: Self-reported allergy [1]
Archaic-like haplotype cluster: Not Known
Clinical Assertion Description Not Known
Population Allele Frequency [2] Genotype Frequency [2]
ALL C: 0.388 G: 0.612 C|C: 0.165 C|G: 0.446 G|G: 0.389
AFRICAN C: 0.286 G: 0.714 C|C: 0.071 C|G: 0.430 G|G: 0.499
ACB C: 0.271 G: 0.729 C|C: 0.073 C|G: 0.396 G|G: 0.531
ASW C: 0.287 G: 0.713 C|C: 0.049 C|G: 0.475 G|G: 0.475
ESN C: 0.273 G: 0.727 C|C: 0.040 C|G: 0.465 G|G: 0.495
GWD C: 0.367 G: 0.633 C|C: 0.115 C|G: 0.504 G|G: 0.381
LWK C: 0.202 G: 0.798 C|C: 0.040 C|G: 0.323 G|G: 0.636
MSL C: 0.276 G: 0.724 C|C: 0.059 C|G: 0.435 G|G: 0.506
YRI C: 0.310 G: 0.690 C|C: 0.102 C|G: 0.417 G|G: 0.481
AMERICAN C: 0.539 G: 0.461 C|C: 0.300 C|G: 0.478 G|G: 0.222
CLM C: 0.521 G: 0.479 C|C: 0.330 C|G: 0.383 G|G: 0.287
MXL C: 0.602 G: 0.398 C|C: 0.328 C|G: 0.547 G|G: 0.125
PEL C: 0.612 G: 0.388 C|C: 0.400 C|G: 0.424 G|G: 0.176
PUR C: 0.457 G: 0.543 C|C: 0.173 C|G: 0.567 G|G: 0.260
EAST ASIAN C: 0.272 G: 0.728 C|C: 0.085 C|G: 0.373 G|G: 0.542
CDX C: 0.323 G: 0.677 C|C: 0.097 C|G: 0.452 G|G: 0.452
CHB C: 0.194 G: 0.806 C|C: 0.029 C|G: 0.330 G|G: 0.641
CHS C: 0.281 G: 0.719 C|C: 0.124 C|G: 0.314 G|G: 0.562
JPT C: 0.240 G: 0.760 C|C: 0.067 C|G: 0.346 G|G: 0.587/td>
KHV C: 0.328 G: 0.672 C|C: 0.111 C|G: 0.434 G|G: 0.455
EUROPEAN C: 0.487 G: 0.513 C|C: 0.250 C|G: 0.473 G|G: 0.276
CEU C: 0.540 G: 0.460 C|C: 0.273 C|G: 0.535 G|G: 0.192
FIN C: 0.505 G: 0.495 C|C: 0.303 C|G: 0.404 G|G: 0.293
GBR C: 0.533 G: 0.467 C|C: 0.264 C|G: 0.538 G|G: 0.198
IBS C: 0.463 G: 0.537 C|C: 0.215 C|G: 0.495 G|G: 0.290
TSI C: 0.407 G: 0.593 C|C: 0.206 C|G: 0.402 G|G: 0.393
SOUTH ASIAN C: 0.437 G: 0.563 C|C: 0.190 C|G: 0.493 G|G: 0.317
BEB C: 0.453 G: 0.547 C|C: 0.209 C|G: 0.488 G|G: 0.302
GIH C: 0.476 G: 0.524 C|C: 0.175 C|G: 0.602 G|G: 0.223
ITU C: 0.353 G: 0.647 C|C: 0.098 C|G: 0.510 G|G: 0.392
PJL C: 0.464 G: 0.536 C|C: 0.260 C|G: 0.406 G|G: 0.333
STU C: 0.441 G: 0.559 C|C: 0.216 C|G: 0.451 G|G: 0.333
ACB: African Caribbean in Barbados
ASW: African Ancestry in Southwest US
ESN: Esan in Nigeria
GWD: Gambian in Western Division, The Gambia
LWK: Luhya in Webuye, Kenya
MSL: Mende in Sierra Leone
YRI: Yoruba in Ibadan, Nigeria
CLM: Colombian in Medellin, Colombia
MXL:

Mexican Ancestry in Los Angeles, California

PEL: Peruvian in Lima, Peru
PUR: Puerto Rican in Puerto Rico
CDX: Chinese Dai in Xishuangbanna, China
CHB: Han Chinese in Bejing, China
CHS: Southern Han Chinese, China
JPT: Japanese in Tokyo, Japan
KHV: Kinh in Ho Chi Minh City, Vietnam
CEU: Utah residents with Northern and Western European ancestry
FIN: Finnish in Finland
GBR: British in England and Scotland
IBS: Iberian Populations in Spain
TSI: Toscani in Italy
BEB: Bengali in Bangladesh
GIH: Gujarati Indian in Houston, TX
ITU: Indian Telugu in the UK
PJL: Punjabi in Lahore, Pakistan
STU: Sri Lankan Tamil in the UK
REFERENCES
1. Dannemann, M., Andres, A.M., and Kelso, J. (2016). Introgression of Neandertal-and Denisovan-like Haplotypes Contributes to Adaptive Variation in Human Toll-like Receptors. The American Journal of Human Genetics 98,22-33
2. Ensembl. (2016). Browse a Genome. Retrieved March 9, 2017 from http://www.ensembl.org/index.html