45.xlsx

Alleles A/C [2] Ancestral:C [2] Ambiguity code: M [2] MAF: 0.44 [2]
Location: 4:38760093 [2]
SNP ID: rs6815814 [1]
GWAS Trait: Helicobacter pylori serologic status, Self-reported allergy [1]
Archaic-like haplotype cluster: Not Known
Clinical Assertion Description Not Known
Population Allele Frequency [2] Genotype Frequency [2]
ALL A: 0.436 C: 0.564 A|A: 0.250 A|C: 0.371 C|C: 0.378
AFRICAN A: 0.103 C: 0.897 A|A: 0.017 A|C: 0.172 C|C: 0.811
ACB A: 0.161 C: 0.839 A|A: 0.010 A|C: 0.302 C|C: 0.688
ASW A: 0.262 C: 0.738 A|A: 0.098 A|C: 0.328 C|C: 0.574
ESN A: 0.106 C: 0.894 A|A: 0.020 A|C: 0.172 C|C: 0.808
GWD A: 0.044 C: 0.956 A|A: 0.009 A|C: 0.071 C|C: 0.920
LWK A: 0.076 C: 0.924 A|A: 0.010 A|C: 0.131 C|C: 0.859
MSL A: 0.035 C: 0.965 A|A: 0.000 A|C: 0.071 C|C: 0.929
YRI A: 0.097 C: 0.903 A|A: 0.000 A|C: 0.194 C|C: 0.806
AMERICAN A: 0.612 C: 0.388 A|A: 0.398 A|C: 0.429 C|C: 0.173
CLM A: 0.649 C: 0.351 A|A: 0.447 A|C: 0.404 C|C: 0.149
MXL A: 0.656 C: 0.344 A|A: 0.406 A|C: 0.500 C|C: 0.094
PEL A: 0.629 C: 0.371 A|A: 0.435 A|C: 0.388 C|C: 0.176
PUR A: 0.538 C: 0.462 A|A: 0.317 A|C: 0.442 C|C: 0.240
EAST ASIAN A: 0.416 C: 0.584 A|A: 0.177 A|C: 0.478 C|C: 0.345
CDX A: 0.548 C: 0.452 A|A: 0.280 A|C: 0.538 C|C: 0.183
CHB A: 0.320 C: 0.680 A|A: 0.087 A|C: 0.466 C|C: 0.447
CHS A: 0.400 C: 0.600 A|A: 0.171 A|C: 0.457 C|C: 0.371
JPT A: 0.288 C: 0.712 A|A: 0.067 A|C: 0.442 C|C: 0.490
KHV A: 0.540 C: 0.460 A|A: 0.293 A|C: 0.495 C|C: 0.212
EUROPEAN A: 0.710 C: 0.290 A|A: 0.529 A|C: 0.362 C|C: 0.109
CEU A: 0.793 C: 0.207 A|A: 0.636 A|C: 0.313 C|C: 0.051
FIN A: 0.843 C: 0.157 A|A: 0.727 A|C: 0.232 C|C: 0.040
GBR A: 0.802 C: 0.198 A|A: 0.626 A|C: 0.352 C|C: 0.022
IBS A: 0.556 C: 0.444 A|A: 0.327 A|C: 0.458 C|C: 0.215
TSI A: 0.584 C: 0.416 A|A: 0.364 A|C: 0.439 C|C: 0.196
SOUTH ASIAN A: 0.501 C: 0.499 A|A: 0.252 A|C: 0.499 C|C: 0.249
BEB A: 0.517 C: 0.483 A|A: 0.279 A|C: 0.477 C|C: 0.244
GIH A: 0.500 C: 0.500 A|A: 0.204 A|C: 0.592 C|C: 0.204
ITU A: 0.451 C: 0.549 A|A: 0.176 A|C: 0.549 C|C: 0.275
PJL A: 0.552 C: 0.448 A|A: 0.354 A|C: 0.396 C|C: 0.250
STU A: 0.490 C: 0.510 A|A: 0.255 A|C: 0.471 C|C: 0.275
ACB: African Caribbean in Barbados
ASW: African Ancestry in Southwest US
ESN: Esan in Nigeria
GWD: Gambian in Western Division, The Gambia
LWK: Luhya in Webuye, Kenya
MSL: Mende in Sierra Leone
YRI: Yoruba in Ibadan, Nigeria
CLM: Colombian in Medellin, Colombia
MXL:

Mexican Ancestry in Los Angeles, California

PEL: Peruvian in Lima, Peru
PUR: Puerto Rican in Puerto Rico
CDX: Chinese Dai in Xishuangbanna, China
CHB: Han Chinese in Bejing, China
CHS: Southern Han Chinese, China
JPT: Japanese in Tokyo, Japan
KHV: Kinh in Ho Chi Minh City, Vietnam
CEU: Utah residents with Northern and Western European ancestry
FIN: Finnish in Finland
GBR: British in England and Scotland
IBS: Iberian Populations in Spain
TSI: Toscani in Italy
BEB: Bengali in Bangladesh
GIH: Gujarati Indian in Houston, TX
ITU: Indian Telugu in the UK
PJL: Punjabi in Lahore, Pakistan
STU: Sri Lankan Tamil in the UK
REFERENCES
1. Dannemann, M., Andres, A.M., and Kelso, J. (2016). Introgression of Neandertal-and Denisovan-like Haplotypes Contributes to Adaptive Variation in Human Toll-like Receptors. The American Journal of Human Genetics 98,22-33
2. Ensembl. (2016). Browse a Genome. Retrieved March 9, 2017 from http://www.ensembl.org/index.html